CHLOROIRIDOIDS · Elusive enzymes with biocatalytic potential: chlorinases in the plant kingdom
Horizon 2020 — Marie Skłodowska-Curie Actions
- Duration
- 2015-12-01 → 2017-11-30
- EU contribution
- €183,455
- Participants
- 1
- Scheme
- MSCA-IF
Lines connect the coordinator with its partners.
Results in brief
Elusive enzymes with biocatalytic potential: chlorinases in the plant kingdom
Plants produce a vast number of structurally diverse chemicals that act on us as dangerous toxins, vitamins, or medicinal compounds. Enzymes are the biological tools used for the production of such natural products and especially those in plants are underexplored since their genes are concealed by an unusual genetic complexity. The motivation for studying the biosynthesis of plant natural products is twofold. First, the biochemical secrets hidden in the blueberries that we eat for breakfast, in the snapdragon flowers planted in our garden and in the periwinkle leaves from which cancer drugs are extracted, deserve some curiosity. Second, the enzymes performing the synthesis of a natural product can serve chemists when they are repurposed as biocatalyts in “green” chemical reactions, shuffled together in synthetic biology platforms, or even reengineered for novel reactions. Iridoids are a natural product class present in blueberries, snapdragon, Madagascar periwinkle and thousands of other plants. Only recently, the first steps of iridoid biosynthesis have been discovered. Especially a biosynthetic step discovered in Madagascar periwinkle in the O’Connor lab, leading from a linear precursor molecule to the characteristic bicyclic core structure of iridoids, has attracted considerable attention. This step is performed by the enzyme iridoid synthase. Later in the biosynthesis, the bicyclic core is rearranged and decorated with sugars, acids or other functional groups until, in many cases, the biosynthetic origin is hardly recognizable. We noticed unusual features in the biosynthesis of iridoids in some plants that deserved further investigation. Previous publications on the biosynthesis of some iridoids suggested a noticeable structural variation of the core scaffold. Compared to the periwinkle iridoids, the configuration of one carbon atom is attached to the opposite side of the molecule. This seemingly small structural difference indicated an iridoid synthase with opposite stereospecificity. We identified the “epi-iridoid synthase” performing this reaction and sought to understand the molecular origin of the inverted stereospecificity. Investigations of the reaction mechanism and comparisons of related iridoid synthases have challenged previous hypotheses about the function of iridoid synthases. Furthermore, some of these iridoids are converted to chlorinated derivatives. Since chlorine incorporating enzymes are generally rare in the plant kingdom and have been elusive in higher plants, we also searched for this enzyme, albeit not successfully.
Data: CORDIS, © European Union
Project objective
A plethora of halogenated natural products documents the existence of halogenases in plants but the responsible enzymes remain elusive. Chlorinated iridoid glycosides, for instance, occur in Phlomis, a genus in the mint family. Based on knowledge of iridoid biosynthesis and a mechanistic hypothesis for the chlorination reaction, we aim to discover the underlying enzymes. We will sequence transcriptomes of Phlomis tissues in different metabolic states, identify homologs of enzymes involved in iridoid biosynthesis, and search for candidate genes showing similar expression patterns. Among these candidates, the chlorinase will be identified by assaying the reactivity of heterologously expressed protein in vitro. Biochemical and structural characterization of the chlorinase will clarify whether chlorine incorporation proceeds via a rare epoxide opening mechanism. The level of chloroiridoid production will be assessed in plants after silencing the chlorinase, in order to confirm the metabolic role of the newly discovered enzyme. Furthermore, transient expression in plants providing structurally diverse precursors will reveal whether chlorinated natural products can be made that are new to nature. The discovery of a chlorinase in higher plants will fill an important gap in our understanding of plant secondary metabolism. Given the potential of chlorine for enhancing protein-ligand interactions, such enzymes would become useful tools for biocatalysis and the engineered biosynthesis of natural products with fine-tuned medicinal properties.
Original text from CORDIS.
Participants
- JOHN INNES CENTRE · NorwichCoordinatorUnited Kingdom
Links
Data: CORDIS, © European Union
