MUSHEUM · Using museum specimens to understand mushroom population genomics.
Horizon Europe — Marie Skłodowska-Curie Actions
- Duration
- 2024-02-01 → 2026-01-31
- EU contribution
- €226,751
- Participants
- 2
- Scheme
- HORIZON-TMA-MSCA-PF-EF
Lines connect the coordinator with its partners.
Results in brief
Using museum specimens to understand mushroom population genomics.
Population biology of mushroom forming fungi (Agaricomycetes) is not well understood. Furtheremore, there are some important open questions regarding basic aspects of the biology of these fungi that have deep implications for the study of their population biology, such as reported mutation rates that are, in different species and systems, orders of magnitude both larger and smaller than most other biological systems. MUSHEUM aims to fill knowledge gaps by using museum specimens collected across a century in Norway to understand how the gene pool has changed over time. DNA will be extracted fromdried samples of two species of wood decay mushrooms, Trichaptum abietinum and Phellopilus nigrolimitatus. Trichaptum is a common, widespread, short lived, and early colonizing mushroom whose population biology has been characterized at global scale. Phellopilus, on the other hand, is long lived, restricted to Northern Europe, mainly associated with well preserved forests and red listed species. We hypothesize that the differences in lifestyle in these two species will be reflected in their gene pool and its change over the XXth century. In the case of Trichaptum, different genetic lineages exist in Norway, likely derived from different routes of post glacial colonization and apparently distributed according to climatic preferences. These climatic prefereces mean that the distribution of these two population might have changed in the past in response to climate change. As Norway is disproportionally affected by climate change, the project will help understand its effects in mushrooms forming fungi, which represent a poorly studied but key component of nutrient cycling and carbon cycles in terrestrial ecosystems. Meanwhile, Phelopillus has been affected by post WW2 forestry policies in Norway, with populations shrinking. Providing a historical perspective will help evaluate the impact of these threats on a mushroom species, a group traditionally neglected in conservation policies.
Data: CORDIS, © European Union
Project objective
Museum collections and other repositories contain a vast amount of specimens associated with metadata detailing the location,habitat and ecological observations of the specimen at the moment of collection. Since these specimens are biological tissues, DNAsequencing techniques can be used to study them. However, their application to fungi is still very limited. One of such applications ispopulation genomics, a field where fungal study is also severely lagging behind that of plants and animals. The combination ofsequences from museum specimens and fresh material will allow us to study populations of two mushroom-forming fungi,Trichaptum abietinum and Phelopillus nigrolimitatus. T. abietinum is an abundant species that is emerging as a model for population studies, with abundant information in Scandinavia. Museum samples will allow us to detect potential changes in selective forces that have affected Norwegian populations, mainly associated with landscape changes over the XXth century. P. nigrolimitatus is a Scandinavian Nearly Threatened species whose populations have been dwindling in association to land usechanges. Museum samples will allow us to compare past and current genetic diversity of Norwegian populations, which will helpinform conservation efforts. The project will generate SNP chips, which will help future population and conservation studies by providing a reliable and cost-efficient analytical tool. MUSHEUM will combine population genomic data with specimen metadata and ecological information to study selective pressures in the two species. Finally, MUSHEUM will make use of the combined genome skimming data generated for the design of SNP probes to generate de novo genome assemblies of the two species. This advances will allow to repurpose data from population studies for the generation of reference assemblies.
Original text from CORDIS.
Participants
Links
- View on CORDIS
- DOI: 10.3030/101103900
- https://ec.europa.eu/research/participants/documents/downloadPublic?documentIds=080166e517239ecf&appId=PPGMS
- https://ec.europa.eu/research/participants/documents/downloadPublic?documentIds=080166e526b94ea9&appId=PPGMS
Data: CORDIS, © European Union
