CLAWS · Corn Leaf Acclimation to Water Stress: Towards uncovering the molecular network that controls cell division and expansion in the growth zone with an emphasis on the role of Reactive Oxygen Species
FP6 — Marie Curie Actions (Human Resources and Mobility)
- Duration
- 2004-09-15 → 2006-09-14
- EU contribution
- €152,753
- Participants
- 1
- Scheme
- EIF
Lines connect the coordinator with its partners.
Results in brief
Final Activity Report Summary - CLAWS (Corn Leaf Acclimation to Water Stress: Towards uncovering the molecular network that controls cell division and expansion in the growth zone ...)
Drought limits crop growth potential in the field and causes considerable yield losses worldwide. Leaf growth and photosynthetic performance are particularly sensitive to low soil water availability. For these reasons, increased leaf tolerance to drought is a highly desirable trait for plant breeding programs. Previous research revealed the importance of several physiological processes involved in growth responses to drought, including altered levels of specific phytohormones and the accumulation of specific metabolites protecting against dehydration. The genes involved in these responses are still poorly characterised, as well as the changes occurring in specific cell types. This project was designed to improve our understanding of leaf responses to drought and discover new genes conferring tolerance to be used for production of future crop varieties. During my fellowship I combined the analysis of leaf growth dynamics at the organ and cellular level, i.e. cell proliferation and cell expansion, with extensive measurements of gene expression using maize leaves as a model system. Leaf growth resulted from the coordination of cell proliferation and cell expansion. The project results showed that reduction of leaf growth during mild drought stress was due to both reduced number and activity of meristematic (stem) cells and due to impaired cell expansion. Because cell proliferation and cell expansion occurred in a linear gradient from the base to the tip of the leaf at distinct positions along the axis of a single maize leaf, I harvested samples at different positions from the leaf base. This simple idea resulted in enriched data with cells of different developmental age for the analysis of thousands of specific Ribonucleic acid (RNA) molecules by genome-wide profiling techniques such as complementary deoxyribonucleic acid amplified fragment length polymorphism (cDNA-AFLP) and microarray, or chip analysis. In contrast with previous experiments that used the entire leaf for similar experiments, this approach revealed, for the first time to the best of my knowledge, distinct gene expression in proliferating and non-proliferating cells in maize leaves under both well-watered (control) and drought conditions. This was important because it allowed more precise identification of genes involved in the control of drought stress responses that would otherwise remain undetectable in whole leaf samples. Using strict criteria for statistical significance, I identified a set of about 200 genes with increased or decreased expression at the RNA level as a consequence of drought in maize leaf proliferating cells. A similar number of genes were identified in expanding cells. These gene sets contained known components that controlled drought responses and, most importantly, novel ones which were not previously described, such as, for example, genes involved in protein biosynthesis and transcription factors. Key regulators of the leaf growth response to drought were included in the latter group of genes and were to be further analysed in greater detail in future work. In summary, during this project I was successful in improving methodological aspects and contributing new knowledge to the field of leaf growth as a response to drought. Both these achievements would be useful in the future for basic and applied research aimed at enhancing yield stability of crops under unfavourable environmental conditions.
Data: CORDIS, © European Union
Project objective
The aim of this project is to study the global changes of gene expression controlling the growth processes (cell division and cell expansion) of maize leaves in response to water-stress with a specific focus on the role of reactive oxygen species (ROS) and redox homeostasis. Using Computational Biology and Bioinformatics, the results will serve to:i) construct a physical map of gene expression of maize leaves;ii) test the hypothesis that ROS are major players in the observed leaf growth inhibition under water stress;iii) contribute to the building of a model of the gene regulatory networks responsible for the coordination of cell cycle and cell expansion under non-limiting growth condition and in response to the environmental perturbation;iv) enhance the knowledge of maize gene function through the comparison with gene databases of model species (rice, Arabidopsis thaliana), whose sequencing has been completed.To achieve this, an analysis of transcript profiles (microarrays) under control and water-stress conditions will be combined with a detailed spatial and temporal framework provided by a kinematic analysis of leaf growth, with cell cycle molecular status, and with ROS and antioxidants profiles along growing leaves. These will constitute the principal data inputs to the model and will be integrated with public domain (gene and protein) expression data and with maps of metabolic pathways to help establishing causal relationships within the regulatory network.
Original text from CORDIS.
Participants
- FLANDERS INTERUNIVERSITY INSTITUTE FOR BIOTECHNOLOGY VZW · ZWIJNAARDECoordinatorBelgium
Links
Data: CORDIS, © European Union
