CELNAPAG · Characterising the Energy Landscape of Nano-Polymer-Aggregates:Application to Synthetic and Bio-polymers
FP6 — Marie Curie Actions (Human Resources and Mobility)
- Duration
- 2005-03-01 → 2007-02-28
- EU contribution
- €158,480
- Participants
- 1
- Scheme
- EIF
Lines connect the coordinator with its partners.
Results in brief
Final Activity Report Summary - CELNAPAG (Characterising the Energy Landscape of Nano-Polymer-Aggregates:Application to Synthetic and Bio-polymers)
During the fellowship the fellow worked in the field of energy landscapes applied to oxide materials. Oxides are important materials in chemistry and technology. Part of the research involved the study of the material silicon-dioxide (SiO2), also known as silica. This material is ubiquitous in our planet's geology, e.g. in the form of quartz and sand. Quartz is the highest density and most stable form of silica. Silica can occur in many other forms as well, either naturally or synthetically produced in the laboratory. Some of these materials have a much more open structure than the dense quartz phase. These materials can have (sub-) nanometer sized pores and cavities in them and are generally known as zeolites. Silica has many technological applications. It is important in optics, since it is the major component of glass. The zeolites, with their well-defined pore sizes are used as a sort of molecular sieve to separate components on the basis of their size. Furthermore silica is often used as a support for catalysts. Silica is also used as an insulator in microelectronics, e.g. in the form of the so called 'gate dielectric', which is the insulating layer between the gate of a transistor and the silicon surface. As the microelectronics technology progresses the components of a silicon chip become smaller and smaller. We are now rapidly approaching the regime where the width of the gate dielectric will be smaller than a nanometer. This was one of our motivations for looking at a nanoscale silica model system: silica nanoclusters in vacuum. In collaboration with Stefan Bromley from the University of Barcelona the fellow performed a 'global optimisation' study of silica clusters. The objective of this study was to try to find the most stable geometric arrangement of atoms in a silica cluster of a certain size. In this study we looked at clusters in the size range of up to 27 SiO2 units using a combination of methods. A quick but inaccurate method, i.e. a 'force field', was used to generate candidates for the most stable cluster geometry. Promising candidates were chosen for a more accurate, but more time-consuming, quantum chemical method ('Density Functional Theory'). It was found that these cluster geometries were very different from quartz or any of the other bulk forms of silica. Quartz-like structures were not expected to appear in clusters until sizes in the hundreds or thousands of SiO2 units. All the geometries found in the abovementioned study had defects in the form of dangling or double bonded oxygen atoms. These clusters were expected to be very reactive. During a second study the fellow looked at 'fully coordinated' clusters, i.e. clusters without defects. The fellow developed and improved a method for specifically generating these fully coordinated cluster geometries. These clusters were conjectured to have special properties making them useful as building blocks for new materials, with new properties, differing from the already existing zeolites and silica materials. In all the above studies clusters, i.e. finite systems, were studied. A new project that the fellow started was the study of bulk, i.e. infinite, oxide systems. An infinite system was modelled by taking a finite cell and periodically replicating it to form an infinite system. This led to mathematical complications that made the project especially challenging. The benchmark system the fellow was looking at was a mixture of calcium-oxide and magnesium-oxide. The fellow was in the process of applying the 'energy landscape' methods developed in the host group to this system. These methods included global optimisation, i.e. finding the most stable form, and the generation of transition states, i.e. structures that mediated minimum energy pathways between two minima. The project was still ongoing, but had already resulted in databases of various rearrangement mechanisms of atoms in the solid.
Data: CORDIS, © European Union
Project objective
The proposed project will develop and apply new theoretical and computational methodologies to study (bio)polymers and (bio)polymer aggregates. The techniques involved focus upon the underlying potential energy landscape and use global optimisation to loca te low-lying minima, and calculation of thermodynamic and dynamic properties using databases of stationary points. Polymer energy landscapes are especially difficult to treat using conventional methods (e.g. molecular dynamics, Monte Carlo) as they featur e vast numbers of local minima, broken ergodicity, and long relaxation times compared to those accessible by standard simulations. Broken ergodicity and slow relaxation issues are caused by experimentally relevant regions of configuration space being separ ated by high energy barriers, which although overcome on experimental time scales, are difficult to treat in simulations. The proposal would extend and generalise methods developed in the host group, which have been successfully applied to clusters and pep tides. The manifestation of the topology of the potential energy surface in observable dynamic/thermodynamic properties will be elucidated for polymer chains with various architectures (linear, ring, comb, dendrites) and for nano-aggregates of multiple cha ins. Aggregation of misfolded peptides is particularly important due to the implication of such structures in a growing variety of debilitating human diseases. There is an urgent need to understand such processes in more detail, especially the underlying g eneric structural principles. The host group has internationally recognised expertise, having introduced or developed many of the above methods. New developments in theory and software will be made available to other workers in the synthetic and biopolymer fields by publication in peer-reviewed journals. Treatment of larger systems, especially aggregates will require parallelisation of existing codes, and may use existing and future grid computing technology.
Original text from CORDIS.
Participants
- University of Cambridge · CambridgeCoordinatorUnited Kingdom
Links
Data: CORDIS, © European Union
