H2020Индивидуална стипендия2020–2022

Lipopeutics · Functional Lipid−Protein Interactions in Integral Membrane Proteins

„Хоризонт 2020“ — Действия „Мария Склодовска-Кюри“

Период
2020-11-01 → 2022-10-31
Финансиране от ЕС
191 852 €
Участници
1
Схема
MSCA-IF

Линиите свързват координатора с партньорите.

Накратко на български

Мембранните протеини и начинът, по който мазнините (липидите) регулират работата им, са в центъра на анализа. Разбирането на тези взаимодействия помага за проектирането на нови лекарства, тъй като голяма част от болестите са свързани с мутации в тези протеини.

Този кратък обзор е генериран от изкуствен интелект

Кратко обяснение, генерирано от езиков модел по текста на CORDIS. Оригиналът е по-долу.

Резултати накратко

Functional Lipid−Protein Interactions in Integral Membrane Proteins

The MSCA fellowship ‘Lipopeutics’ focusses on membrane proteins – a class of proteins that make up a third of the human proteome and perform a significant role in a plethora of cellular functions including signalling, molecular transport, cellular adhesion and even cell death. This importance of membrane proteins to physiological function is exemplified by recent genomic studies identifying nearly 200,000 disease associated mutations within them. Considering this significance, enormous academic and industrial efforts have been focussed on these proteins over the past decades. However, membrane proteins still makeup nearly 60% of all current drug targets and limited novel drugs for them have been developed. Despite the pharmaceutical impasse, significant experimental headway has been made in deciphering the underlying functional basis of these proteins. The phospholipids within the cellular membrane were long thought to ‘merely’ anchor the protein. However, advances in electron microscopy and mass-spectrometry methods have identified the lipids to be active modulators of protein function. The scientific objective of the Lipopeutics project is to rationalize this endogenous lipid modulation of protein function to design novel hydrophobic drugs. To achieve the overarching scientific objective, the project was divided into four specific subobjectives each ascribed to its own Work Package. (1) Firstly, interaction sites of specific lipids within the protein structure needed to be identified. (2) Subsequently, the role of this lipid/binding-site in the modulation of protein function needed to be validated. (3) Then, hydrophobic lipid-like drug molecules capable of binding at the sites need to be identified. (4) Finally, the chemical structures of the identified drug molecules need to be optimized.

Текст от CORDIS, на английски · Данни: CORDIS, © Европейски съюз

Цел на проекта

Membrane proteins constitute a third of the human proteome and their relevance to disease has led these proteins to make up more than half of all current drug targets. However, despite this push to identify agents for membrane proteins, the number of established disease-associated targets are limited. The 'open' and solvent-accessible nature of most membrane protein orthosteric sites often results in limited specificity of potential drugs. The Trans-Membrane domains (TMD) while displaying greater variability among membrane proteins were however long considered lacking in specific interactions. But significant developments in experimental techniques are now identifying this domain to interact and be actively regulated by the diverse lipid components of the membrane. This Lipopeutics project attempts to determine if the analysis of the protein's Lipid interactions can be a pathway to the development of allosteric drugs targeted at these bilayer-exposed pockets. Unfolding in three major steps, the project first aims to identify specific lipid binding sites with the TMD through the use of long-timescale coarse-grain Molecular Dynamics simulations. Subsequently, the role of this lipid binding event in the protein's functional modulation is validated through atomistic simulations using the Markov State Modelling approach. Finally, cheminformatic screening is used to design lipid-mimicking compounds that are capable of binding within the hydrophobic pocket and stabilizing specific protein functional states.

Оригинален текст от CORDIS (на английски).

Участници

  • KUNGLIGA TEKNISKA HOEGSKOLAN · StockholmКоординаторШвеция

Връзки

Данни: CORDIS, © Европейски съюз